Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7698

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16065 and 16066 are separated by 409 nucleotides16066 and 16067 are separated by 190 nucleotides mRNA_7697: 16065 - K00815 TAT tyrosine aminotransferase, at 862,467 to 863,875 16065 mRNA_7698: 16066 - Hypothetical Protein, at 864,285 to 865,332 16066 mRNA_7699: 16067 - K11681 SWR1 helicase SWR1, at 865,523 to 871,227 16067

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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863,402 - 16065 mRNA_7697 0.66 +0.0
863,578 - 16065 mRNA_7697 0.79 +0.4
863,581 + 16065 mRNA_7697 0.79 +1.0
863,588 + 16065 mRNA_7697 0.80 -0.4
863,664 - 16065 mRNA_7697 0.85 -1.5
863,677 + 16065 mRNA_7697 0.86 -0.1
863,709 - 16065 mRNA_7697 0.88 +0.6
863,710 + 16065 mRNA_7697 0.88 +0.6
863,734 + 16065 mRNA_7697 0.90 -1.7
863,974 + +2.6
863,980 + +0.4
863,984 + +0.3
863,996 - +1.5
864,000 + +1.0
864,004 - -0.0
864,017 + +0.6
864,020 - -0.1
864,027 - -0.7
864,033 + +2.0
864,034 - -0.3
864,036 + -0.6
864,060 - -0.3
864,061 + +0.3
864,062 + +0.5
864,076 - -0.3
864,076 - -1.3
864,083 - +0.6
864,086 - +0.4
864,089 + -0.6
864,089 + -0.2
864,118 - +1.6
864,118 - +0.2
864,118 + +2.8
864,235 + +0.9
864,245 + +1.0
864,318 - +0.1
864,361 - +0.5
864,371 - -0.5
864,382 - +2.0
864,794 - 16066 mRNA_7698 0.49 -0.8
864,982 + 16066 mRNA_7698 0.67 -0.9
865,147 - 16066 mRNA_7698 0.82 +0.5
865,147 - 16066 mRNA_7698 0.82 +0.0
865,306 + -1.3

Or see this region's nucleotide sequence