Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7835

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16202 and 16203 are separated by 427 nucleotides16203 and 16204 are separated by 220 nucleotides mRNA_7834: 16202 - HMMPfam-Sulfate transporter family-PF00916,HMMPfam-STAS domain-PF01740,HMMPfam-Sulfate transporter N-terminal domain with GLY motif-PF13792,ProSiteProfiles-STAS domain profile.-PS50801,SUPERFAMILY--SSF52091, at 1,172,095 to 1,175,017 16202 mRNA_7835: 16203 - K01823 idi, IDI isopentenyl-diphosphate Delta-isomerase, at 1,175,445 to 1,176,627 16203 mRNA_7836: 16204 - K02992 RP-S7, MRPS7, rpsG small subunit ribosomal protein S7, at 1,176,848 to 1,177,701 16204

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,174,763 - -0.4
1,174,784 - +0.4
1,174,909 - -0.1
1,174,928 + +0.6
1,174,931 + +0.6
1,175,045 - +0.1
1,175,059 - -2.1
1,175,072 + +0.3
1,175,076 - +1.8
1,175,320 + -1.0
1,175,343 - +0.3
1,176,642 + -0.9
1,176,657 + -0.8
1,176,682 + +0.8
1,176,781 - -0.3
1,176,782 - -1.3
1,176,784 + +0.0
1,176,789 + +0.6
1,176,802 + -0.1
1,176,806 + +1.0

Or see this region's nucleotide sequence