Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7900

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16267 and 16268 are separated by 486 nucleotides mRNA_7899: 16267 - K00618 E2.3.1.1 amino-acid N-acetyltransferase, at 1,329,365 to 1,331,583 16267 mRNA_7900: 16268 - Hypothetical Protein, at 1,332,070 to 1,333,846 16268

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,331,457 + +0.6
1,331,536 + -0.1
1,331,540 - +0.7
1,331,556 - -1.1
1,331,567 - +1.8
1,331,585 + +0.4
1,331,735 - -3.8
1,331,742 - -0.9
1,331,770 + +1.8
1,331,776 + -0.9
1,331,821 - +2.1
1,331,835 - +0.0
1,331,849 + -0.2
1,331,854 + -0.4
1,331,862 - +1.0
1,331,880 - +0.8
1,331,897 + +0.4
1,331,906 - +0.4
1,331,913 + +0.2
1,332,015 + +2.3
1,332,177 + -0.2
1,332,197 + +0.6
1,332,599 + 16268 mRNA_7900 0.30 +0.5
1,332,607 + 16268 mRNA_7900 0.30 +2.5
1,332,610 - 16268 mRNA_7900 0.30 +2.7
1,333,284 - 16268 mRNA_7900 0.68 +3.2
1,333,417 - 16268 mRNA_7900 0.76 +1.0
1,333,472 - 16268 mRNA_7900 0.79 +1.3
1,333,782 + +0.9
1,333,882 - +0.6
1,333,887 - +0.1
1,333,917 + +1.6
1,333,918 - -0.4
1,334,028 - -0.5
1,334,029 - +0.9
1,334,037 - +1.6
1,334,049 - +0.2
1,334,066 + -0.1
1,334,079 + +0.0
1,334,120 - -0.1
1,334,130 + +1.6
1,334,177 - -0.9
1,334,177 + +0.2
1,334,181 - -0.1
1,334,198 - +1.5
1,334,199 + +0.4
1,334,210 + +0.5
1,334,213 - +1.5
1,334,215 + +0.3
1,334,223 + +0.2
1,334,228 - +1.3
1,334,242 - +0.4
1,334,247 - -0.9
1,334,250 - -0.2
1,334,254 - -0.0
1,334,255 + +0.0
1,334,256 + +0.7
1,334,269 - -0.4
1,334,301 - -0.9
1,334,315 - +0.1
1,334,319 - +0.3
1,334,320 + +0.9
1,334,325 + +0.1
1,334,335 - -0.9
1,334,336 + -1.4
1,334,481 - -1.1
1,334,481 + +0.8
1,334,487 + +0.2
1,334,595 + +1.1
1,334,747 - +0.6

Or see this region's nucleotide sequence