Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7921

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16288 and 16289 are separated by 221 nucleotides16289 and 16290 are separated by 514 nucleotides mRNA_7920: 16288 - K02219 CKS1 cyclin-dependent kinase regulatory subunit CKS1, at 24,120 to 24,922 16288 mRNA_7921: 16289 - KOG3022 Predicted ATPase, nucleotide-binding, at 25,144 to 26,524 16289 mRNA_7922: 16290 - K17065 DNM1L dynamin 1-like protein, at 27,039 to 30,180 16290

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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24,299 - 16288 mRNA_7920 0.22 +0.2
24,319 + 16288 mRNA_7920 0.25 -0.5
24,323 - 16288 mRNA_7920 0.25 +0.6
24,434 + 16288 mRNA_7920 0.39 +1.2
24,640 + 16288 mRNA_7920 0.65 +2.0
24,923 + +1.5
24,998 - +1.0
25,057 + +1.2
25,077 + +1.0
26,278 + 16289 mRNA_7921 0.82 -0.1
26,518 - -0.2
26,523 + +1.1
26,527 + +2.4
26,531 - +0.4
26,558 - -0.1
26,650 - +0.9
26,674 - +0.9
26,676 - +2.0
26,681 - -0.3
26,683 + -1.1
26,696 + -1.5
26,697 - -0.2
26,702 + -0.4
26,713 + +0.2
26,840 - -2.0
26,842 - -0.1
26,844 - +0.0
26,847 + +0.4
26,849 - +1.5
26,851 + +0.2
26,852 - +1.0
26,856 + +0.2
26,873 - -0.5
26,896 + +0.9
26,902 + -1.2
27,132 - -0.5

Or see this region's nucleotide sequence