Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7971

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16338 and 16339 are separated by 292 nucleotides16339 and 16340 are separated by 217 nucleotides mRNA_7970: 16338 - SUPERFAMILY--SSF144232, at 115,514 to 116,661 16338 mRNA_7971: 16339 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 116,954 to 120,210 16339 mRNA_7972: 16340 - Hypothetical Protein, at 120,428 to 122,131 16340

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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115,966 - 16338 mRNA_7970 0.39 -0.6
116,048 + 16338 mRNA_7970 0.47 +0.5
116,051 - 16338 mRNA_7970 0.47 +0.6
116,114 + 16338 mRNA_7970 0.52 +0.3
116,117 + 16338 mRNA_7970 0.53 +0.3
116,135 - 16338 mRNA_7970 0.54 -0.3
116,170 + 16338 mRNA_7970 0.57 +0.7
116,185 - 16338 mRNA_7970 0.58 -0.1
116,267 + 16338 mRNA_7970 0.66 -1.3
116,290 - 16338 mRNA_7970 0.68 +0.4
116,404 + 16338 mRNA_7970 0.78 +1.7
116,430 - 16338 mRNA_7970 0.80 +0.5
116,431 + 16338 mRNA_7970 0.80 -0.0
116,437 - 16338 mRNA_7970 0.80 -0.6
116,440 - 16338 mRNA_7970 0.81 -0.5
116,488 + 16338 mRNA_7970 0.85 +1.5
116,586 - +0.7
116,594 - +0.5
116,736 + +0.5
116,793 + -0.0
116,797 - +0.3
117,105 + +0.4
117,159 + -1.0
117,226 - +0.1
117,229 - +0.9
117,247 - -1.7
117,798 - 16339 mRNA_7971 0.26 +0.7
117,918 - 16339 mRNA_7971 0.30 -1.1
117,921 + 16339 mRNA_7971 0.30 +0.3
117,936 - 16339 mRNA_7971 0.30 +0.5
117,963 - 16339 mRNA_7971 0.31 +1.7
117,964 - 16339 mRNA_7971 0.31 -0.4
117,967 + 16339 mRNA_7971 0.31 +1.3
117,985 - 16339 mRNA_7971 0.32 +0.5
118,110 + 16339 mRNA_7971 0.35 -0.7
118,604 - 16339 mRNA_7971 0.51 +2.3
118,682 + 16339 mRNA_7971 0.53 -2.0
118,699 - 16339 mRNA_7971 0.54 -1.9
118,707 + 16339 mRNA_7971 0.54 -0.3
118,772 + 16339 mRNA_7971 0.56 -0.7
118,849 + 16339 mRNA_7971 0.58 +0.2
118,888 + 16339 mRNA_7971 0.59 +0.3
118,956 + 16339 mRNA_7971 0.61 +1.7
118,972 - 16339 mRNA_7971 0.62 -0.3
119,169 - 16339 mRNA_7971 0.68 -1.0
119,439 - 16339 mRNA_7971 0.76 -0.1
119,513 + 16339 mRNA_7971 0.79 +1.0
119,560 + 16339 mRNA_7971 0.80 -0.9
120,006 + -0.1
120,013 - +0.0
120,198 + -1.2
120,235 - +0.4
120,397 + +0.1
120,420 - -0.2
120,436 + -0.1
120,450 - +1.0
120,564 + +0.6
120,629 + 16340 mRNA_7972 0.12 +0.2
120,648 + 16340 mRNA_7972 0.13 +1.1
120,697 + 16340 mRNA_7972 0.16 +2.8
120,975 - 16340 mRNA_7972 0.32 +0.8
120,977 - 16340 mRNA_7972 0.32 +0.3
121,000 - 16340 mRNA_7972 0.34 -0.2
121,081 + 16340 mRNA_7972 0.38 -0.4
121,081 + 16340 mRNA_7972 0.38 +0.0
121,183 + 16340 mRNA_7972 0.44 +0.4

Or see this region's nucleotide sequence