Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8022

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16389 and 16390 are separated by 111 nucleotides16390 and 16391 are separated by 123 nucleotides mRNA_8021: 16389 - HMMPfam-NAD(P)-binding Rossmann-like domain-PF13450,SUPERFAMILY--SSF51905, at 227,452 to 229,516 16389 mRNA_8022: 16390 - BLAST Ubiquinone biosynthesis protein coq9, mitochondrial [..., at 229,628 to 230,640 16390 mRNA_8023: 16391 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSitePatterns-Trp-Asp (WD) repeats signature.-PS00678,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 230,764 to 233,185 16391

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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228,709 - 16389 mRNA_8021 0.61 -0.6
229,109 - 16389 mRNA_8021 0.80 +0.2
229,158 + 16389 mRNA_8021 0.83 -0.2
229,280 + 16389 mRNA_8021 0.89 -1.2
229,408 - -0.6
229,411 + +0.8
229,546 - +0.2
229,557 + +0.6
229,579 + +0.6
229,580 - +0.1
230,602 + -0.4
230,605 - +0.3
230,888 - +0.3
230,926 + -0.6
231,153 - 16391 mRNA_8023 0.16 +1.3
231,197 - 16391 mRNA_8023 0.18 +0.4
231,311 + 16391 mRNA_8023 0.23 +1.2

Or see this region's nucleotide sequence