Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8029

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16396 and 16397 are separated by 105 nucleotides16397 and 16398 are separated by 491 nucleotides mRNA_8028: 16396 - K06100 SYMPK symplekin, at 244,729 to 248,815 16396 mRNA_8029: 16397 - K02152 ATPeV1G, ATP6G V-type H+-transporting ATPase subunit G, at 248,921 to 249,552 16397 mRNA_8030: 16398 - KOG0116 RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains, at 250,044 to 251,923 16398

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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248,885 + -1.3
249,787 - +0.4
249,951 - -0.6
250,200 + +0.7
250,364 + 16398 mRNA_8030 0.17 +1.7

Or see this region's nucleotide sequence