Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8068

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16435 and 16436 are separated by 257 nucleotides16436 and 16437 are separated by 238 nucleotides mRNA_8067: 16435 - K12399 AP3S AP-3 complex subunit sigma, at 346,568 to 347,476 16435 mRNA_8068: 16436 - KOG1198 Zinc-binding oxidoreductase, at 347,734 to 349,027 16436 mRNA_8069: 16437 - K11240 MSG5 tyrosine-protein phosphatase MSG5, at 349,266 to 352,237 16437

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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347,015 + 16435 mRNA_8067 0.49 +0.7
347,088 + 16435 mRNA_8067 0.57 +1.0
347,286 + 16435 mRNA_8067 0.79 +0.6
347,476 - +1.1
347,504 + -0.2
347,563 + +0.4
347,658 - -0.3
347,660 + -0.6
347,674 - -0.4
347,754 + +1.1
347,772 - -0.6
347,779 + -1.6
347,798 + +0.6
347,799 - +2.6
347,918 - 16436 mRNA_8068 0.14 -1.2
347,920 - 16436 mRNA_8068 0.14 +0.4
347,930 - 16436 mRNA_8068 0.15 -1.7
347,970 + 16436 mRNA_8068 0.18 -0.0
347,973 + 16436 mRNA_8068 0.18 -0.5
347,986 + 16436 mRNA_8068 0.19 +0.5
348,013 + 16436 mRNA_8068 0.22 +0.5
348,258 - 16436 mRNA_8068 0.40 -0.9
348,296 + 16436 mRNA_8068 0.43 -1.7
348,393 - 16436 mRNA_8068 0.51 -0.9
348,858 + 16436 mRNA_8068 0.87 +0.0
348,881 + 16436 mRNA_8068 0.89 -0.4
349,280 - +1.3
349,617 + 16437 mRNA_8069 0.12 +0.6
349,738 - 16437 mRNA_8069 0.16 +0.1
349,794 - 16437 mRNA_8069 0.18 +0.6
349,851 - 16437 mRNA_8069 0.20 -0.5
349,880 - 16437 mRNA_8069 0.21 +0.1

Or see this region's nucleotide sequence