Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8118

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16485 and 16486 are separated by 426 nucleotides16486 and 16487 are separated by 295 nucleotides mRNA_8117: 16485 - K06041 kdsD, kpsF arabinose-5-phosphate isomerase, at 455,080 to 456,482 16485 mRNA_8118: 16486 - Hypothetical Protein, at 456,909 to 458,986 16486 mRNA_8119: 16487 - Hypothetical Protein, at 459,282 to 461,489 16487

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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455,910 + 16485 mRNA_8117 0.59 +1.2
456,205 - 16485 mRNA_8117 0.80 +0.0
456,467 + +0.0
456,639 - +2.3
456,807 - -2.7
457,275 + 16486 mRNA_8118 0.18 +0.8
457,276 - 16486 mRNA_8118 0.18 +0.9
457,568 - 16486 mRNA_8118 0.32 +0.8
457,691 + 16486 mRNA_8118 0.38 +0.9
457,696 - 16486 mRNA_8118 0.38 -0.7
459,022 - +1.3

Or see this region's nucleotide sequence