Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8133

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16500 and 16501 are separated by 458 nucleotides16501 and 16502 are separated by 244 nucleotides mRNA_8132: 16500 - SUPERFAMILY--SSF52047, at 495,876 to 497,390 16500 mRNA_8133: 16501 - HMMPfam-Senescence-associated protein-PF06911, at 497,849 to 499,471 16501 mRNA_8134: 16502 - K17891 ERV2 FAD-linked sulfhydryl oxidase, at 499,716 to 500,735 16502

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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496,986 + 16500 mRNA_8132 0.73 -0.2
497,224 - 16500 mRNA_8132 0.89 +0.3
497,333 - -0.0
497,419 + -0.6
497,422 - -0.6
497,431 - -1.9
497,435 + +1.1
497,436 - +0.2
497,446 + +2.6
497,446 - -0.1
497,453 - +2.1
497,579 + +0.5
497,590 + -1.4
497,626 - +0.3
497,705 + +0.1
497,897 - +0.3
497,918 + +1.6
497,932 + +1.5
498,046 + 16501 mRNA_8133 0.12 -0.5
498,348 + 16501 mRNA_8133 0.31 +0.7
498,792 - 16501 mRNA_8133 0.58 +0.1
499,084 + 16501 mRNA_8133 0.76 +0.7
499,624 - +2.9
499,640 - +0.7
500,156 - 16502 mRNA_8134 0.43 +0.3
500,237 + 16502 mRNA_8134 0.51 +2.6
500,362 + 16502 mRNA_8134 0.63 +0.3
500,373 - 16502 mRNA_8134 0.64 -0.1

Or see this region's nucleotide sequence