Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8179

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16547 and 16548 are separated by 225 nucleotides mRNA_8179: 16547 - K20705 DNMBP, ARHGEF36, TUBA dynamin-binding protein, at 608,885 to 612,908 16547 mRNA_8180: 16548 - K13127 RNF113A, CWC24 RING finger protein 113A, at 613,134 to 614,430 16548

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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607,911 - +1.1
607,943 + +0.3
607,947 - -1.9
607,947 + +0.8
607,956 - +1.7
607,957 + +2.6
607,968 - +0.3
607,969 - +1.1
607,976 + +1.5
607,985 - +0.3
608,012 - +0.1
608,026 - -0.1
608,034 - -0.4
608,069 + +0.5
608,071 - +0.6
608,073 - +0.6
608,081 + -0.1
608,082 + -0.9
608,083 + -0.6
608,086 - +0.3
608,086 + -0.7
608,087 - -0.9
608,089 + +0.6
608,091 - -1.9
608,096 + +0.5
608,099 - +0.8
608,101 + +1.3
608,103 + -0.1
608,112 - -0.1
608,112 - +1.1
608,117 + -1.2
608,120 + -1.2
608,128 - -0.2
608,145 + +0.4
608,158 + -0.0
608,158 + +0.8
608,161 - +0.7
608,161 + +0.9
608,162 + -0.0
608,182 + +0.2
608,182 + +0.5
608,186 + -0.4
608,186 + +1.2
608,187 - -0.3
608,191 - +0.3
608,193 - -0.8
608,197 - -0.9
608,198 + +0.1
608,202 + -1.5
608,208 - -0.2
608,209 + -0.6
608,209 + +0.6
608,209 + +1.0
608,219 - +0.4
608,222 + -1.7
608,223 + -1.1
608,229 - +0.7
608,231 + +0.7
608,239 - +1.1
608,244 + +0.8
608,245 - +1.9
608,246 + +0.5
608,246 - -1.3
608,246 + +0.1
608,247 + +0.3
608,251 - +0.5
608,256 + -0.3
608,257 - -0.6
608,257 - -1.0
608,262 - -1.0
608,263 + -0.1
608,264 - +0.4
608,266 + +0.1
608,268 + +0.5
608,268 + -0.1
608,271 - -1.8
608,275 + +0.2
608,284 + +0.3
608,287 + +3.3
608,294 + +0.1
608,294 + -0.3
608,317 + +1.4
608,333 - +0.4
608,335 + -0.4
608,345 - +0.7
608,349 - -1.5
608,353 - -0.1
608,359 - +0.2
608,366 - -0.6
608,371 - -0.6
608,375 - +1.5
608,378 + +1.1
608,381 - +1.2
608,382 - +0.7
608,382 - -1.6
608,391 + +0.0
608,392 + +0.3
608,400 + -1.6
608,416 - -1.0
608,548 - -0.1
608,678 - +0.3
608,699 - +1.0
608,713 + +0.6
608,713 + +0.5
608,717 - +1.8
608,721 + +2.1
608,731 - +1.4
608,835 - -0.1
608,840 - -0.8
609,042 + +0.4
609,107 + -0.6
609,114 - -0.8
609,126 + -0.9
609,143 + +0.2
609,150 + +1.4
609,270 - +0.3
609,277 + -1.1
609,284 + -0.9
609,848 - 16547 mRNA_8179 0.24 +0.3
610,168 + 16547 mRNA_8179 0.32 -0.8
610,336 - 16547 mRNA_8179 0.36 +1.2
611,053 + 16547 mRNA_8179 0.54 -0.7
611,075 - 16547 mRNA_8179 0.54 -0.1
611,083 + 16547 mRNA_8179 0.55 +1.0
611,175 + 16547 mRNA_8179 0.57 +0.1
611,188 - 16547 mRNA_8179 0.57 -0.4
611,729 + 16547 mRNA_8179 0.71 +1.7
611,764 + 16547 mRNA_8179 0.72 -0.5
611,944 + 16547 mRNA_8179 0.76 +1.1
612,061 + 16547 mRNA_8179 0.79 +0.3
612,942 - +0.6
613,077 + +0.9
613,079 - +0.7

Or see this region's nucleotide sequence