Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8193

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16560 and 16561 are separated by 202 nucleotides16561 and 16562 are separated by 285 nucleotides mRNA_8192: 16560 - K12780 REC8 meiotic recombination protein REC8, fungi type, at 637,795 to 641,120 16560 mRNA_8193: 16561 - Hypothetical Protein, at 641,323 to 644,118 16561 mRNA_8194: 16562 - K20794 NAA40, NAT4 N-alpha-acetyltransferase 40, at 644,404 to 645,092 16562

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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640,370 + 16560 mRNA_8192 0.77 -0.1
640,388 - 16560 mRNA_8192 0.78 +1.8
640,553 - 16560 mRNA_8192 0.83 -0.4
640,860 - +1.6
641,129 - -0.5
641,436 + +1.1
641,584 + +1.3
642,447 + 16561 mRNA_8193 0.40 +0.7
643,340 - 16561 mRNA_8193 0.72 +0.3
643,632 + 16561 mRNA_8193 0.83 +0.8
643,887 - +0.1
643,900 - -0.2
643,907 + +0.2
644,035 + +1.3
644,041 - -0.3
644,064 + -0.6
644,192 + -0.4
644,195 - +0.2
644,209 + +0.9
644,325 - +0.5
644,344 + -2.3
644,510 + 16562 mRNA_8194 0.15 -0.1
644,628 - 16562 mRNA_8194 0.33 +1.6
644,650 + 16562 mRNA_8194 0.36 +0.5
644,809 + 16562 mRNA_8194 0.59 +1.5

Or see this region's nucleotide sequence