Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8211

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16579 and 16580 are separated by 205 nucleotides mRNA_8211: 16579 - K02894 RP-L23e, RPL23 large subunit ribosomal protein L23e, at 679,410 to 680,572 16579 mRNA_8212: 16580 - K17878 NNT1 nicotinamide N-methyltransferase, at 680,778 to 681,996 16580

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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678,412 - -1.4
678,419 + -0.3
678,427 + +0.9
678,524 + -0.5
678,549 - -0.7
678,688 + -0.1
678,695 + +2.1
678,697 - +0.2
678,703 + -1.1
678,725 + -1.2
678,772 + +1.6
678,839 - -1.1
678,849 - -0.7
678,859 + +0.8
678,982 - +1.8
679,000 - -0.5
679,009 - -1.4
679,024 - +0.9
680,895 - -0.3
680,900 - 16580 mRNA_8212 0.10 +0.1
680,931 + 16580 mRNA_8212 0.13 -0.2
681,180 - 16580 mRNA_8212 0.33 -1.1
681,482 - 16580 mRNA_8212 0.58 +0.6
681,514 + 16580 mRNA_8212 0.60 +0.1

Or see this region's nucleotide sequence