Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8236

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16603 and 16604 are separated by 169 nucleotides16604 and 16605 are separated by 393 nucleotides mRNA_8235: 16603 - Hypothetical Protein, at 731,881 to 732,842 16603 mRNA_8236: 16604 - Interpro Fungal protein of unknown function (DUF1770) 0, at 733,012 to 733,833 16604 mRNA_8237: 16605 - K04345 PKA protein kinase A, at 734,227 to 736,264 16605

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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732,013 - 16603 mRNA_8235 0.14 -0.7
732,023 + 16603 mRNA_8235 0.15 -0.4
732,477 - 16603 mRNA_8235 0.62 +0.0
732,605 + 16603 mRNA_8235 0.75 +1.3
732,617 + 16603 mRNA_8235 0.77 +0.3
732,767 + -0.5
732,768 - +0.9
732,938 + +0.9
733,093 + +1.4
733,232 - 16604 mRNA_8236 0.27 +1.1
733,239 - 16604 mRNA_8236 0.28 +0.5
733,659 - 16604 mRNA_8236 0.79 +2.8
733,685 - 16604 mRNA_8236 0.82 +1.0
733,692 - 16604 mRNA_8236 0.83 -0.9
733,692 - 16604 mRNA_8236 0.83 +0.6
733,701 + 16604 mRNA_8236 0.84 +0.0
733,725 - 16604 mRNA_8236 0.87 -0.7
733,835 + +0.1
733,837 + +0.9
734,250 + +0.7
734,251 - +0.7
734,272 + +1.9
734,426 + -0.5
734,459 + 16605 mRNA_8237 0.11 +0.7
734,581 + 16605 mRNA_8237 0.17 +1.0
734,656 - 16605 mRNA_8237 0.21 -0.4
734,679 + 16605 mRNA_8237 0.22 +0.5

Or see this region's nucleotide sequence