Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8258

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16625 and 16626 are separated by 571 nucleotides16626 and 16627 are separated by 163 nucleotides mRNA_8257: 16625 - Hypothetical Protein, at 781,608 to 783,026 16625 mRNA_8258: 16626 - Hypothetical Protein, at 783,598 to 784,234 16626 mRNA_8259: 16627 - HMMPfam-DENN (AEX-3) domain-PF02141,ProSiteProfiles-DENN domain profile.-PS50211,SMART-Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN-SM00799, at 784,398 to 789,104 16627

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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782,920 - +0.3
783,691 - 16626 mRNA_8258 0.15 -1.3
783,982 + 16626 mRNA_8258 0.60 +0.9
785,036 - 16627 mRNA_8259 0.14 -1.1
785,180 - 16627 mRNA_8259 0.17 -0.5

Or see this region's nucleotide sequence