Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8272

Experiment: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16639 and 16640 are separated by 338 nucleotides16640 and 16641 are separated by 342 nucleotides mRNA_8271: 16639 - K14397 NUDT21, CPSF5, CFIM25 cleavage and polyadenylation specificity factor subunit 5, at 814,047 to 815,109 16639 mRNA_8272: 16640 - K07750 E1.14.13.72, SC4MOL, ERG25 methylsterol monooxygenase, at 815,448 to 817,149 16640 mRNA_8273: 16641 - K01866 YARS, tyrS tyrosyl-tRNA synthetase, at 817,492 to 819,082 16641

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
814,609 - 16639 mRNA_8271 0.53 +0.0
814,625 - 16639 mRNA_8271 0.54 -0.0
814,631 + 16639 mRNA_8271 0.55 -0.1
814,636 + 16639 mRNA_8271 0.55 -0.4
814,713 - 16639 mRNA_8271 0.63 +1.6
814,728 - 16639 mRNA_8271 0.64 -0.4
814,731 - 16639 mRNA_8271 0.64 -1.7
814,780 + 16639 mRNA_8271 0.69 +0.1
814,857 + 16639 mRNA_8271 0.76 +0.1
814,871 + 16639 mRNA_8271 0.78 +1.0
814,873 + 16639 mRNA_8271 0.78 -0.7
814,875 + 16639 mRNA_8271 0.78 +0.5
814,895 - 16639 mRNA_8271 0.80 +2.0
814,897 - 16639 mRNA_8271 0.80 -0.5
814,898 + 16639 mRNA_8271 0.80 -0.6
814,901 + 16639 mRNA_8271 0.80 -0.7
814,901 + 16639 mRNA_8271 0.80 +0.2
814,919 - 16639 mRNA_8271 0.82 -1.6
814,984 + 16639 mRNA_8271 0.88 +0.4
815,014 - +1.4
815,018 - -0.3
815,020 - +0.2
815,047 - +1.0
815,047 + +1.3
815,049 - +0.3
815,055 + -1.2
815,061 + -0.5
815,064 + -0.6
815,076 + -0.5
815,145 - -0.0
815,149 - +0.6
815,153 - -0.8
815,155 - -0.3
815,166 - -2.3
815,168 + +0.0
815,170 - -0.9
815,178 - -0.9
815,189 + -1.6
815,198 - +0.6
815,200 - +0.2
815,201 + +0.6
815,214 - -0.2
815,214 - +1.6
815,217 + -0.3
815,218 - -0.9
815,220 - +0.4
815,221 - +0.5
815,223 + +1.4
815,225 - -1.1
815,292 - -0.3
815,310 - -1.8
815,322 - +0.1
815,350 - -0.1
815,351 - -0.4
815,354 - +0.2
815,364 - +0.2
817,289 - +0.5
817,304 - -0.3
817,323 + +0.2
817,413 - +0.0
817,415 - -1.0
817,426 - +1.7

Or see this region's nucleotide sequence