Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8338

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16705 and 16706 are separated by 532 nucleotides mRNA_8337: 16705 - K01267 DNPEP aspartyl aminopeptidase, at 968,158 to 970,145 16705 mRNA_8338: 16706 - Hypothetical Protein, at 970,678 to 971,361 16706

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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969,746 - 16705 mRNA_8337 0.80 +0.0
969,895 - 16705 mRNA_8337 0.87 +0.2
969,904 + 16705 mRNA_8337 0.88 +2.5
970,019 + +1.7
970,078 + +2.0
970,083 + -1.0
970,371 + -0.1
970,375 - +1.2
970,376 + -0.4
970,377 + -0.8
970,409 + -0.1
970,431 + +0.0
970,471 + +0.2
970,487 - -0.9
970,495 + +0.0
970,503 - +1.3
970,620 - +0.4
970,793 + 16706 mRNA_8338 0.17 -0.5
971,216 - 16706 mRNA_8338 0.79 -0.6
971,218 + 16706 mRNA_8338 0.79 +0.9
971,660 - +0.0
971,671 + -0.5
971,943 - +0.3
972,119 + +1.0
972,192 - -0.2
972,205 + -0.5
972,232 - -0.4
972,252 - +2.6
972,283 - +1.8
972,296 + +0.2

Or see this region's nucleotide sequence