Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8340

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16707 and 16708 are separated by 115 nucleotides16708 and 16709 are separated by 200 nucleotides mRNA_8339: 16707 - K06180 rluD 23S rRNA pseudouridine1911/1915/1917 synthase, at 972,438 to 973,571 16707 mRNA_8340: 16708 - K03254 EIF3A translation initiation factor 3 subunit A, at 973,687 to 977,357 16708 mRNA_8341: 16709 - K14569 BMS1 ribosome biogenesis protein BMS1, at 977,558 to 981,587 16709

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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972,711 + 16707 mRNA_8339 0.24 +0.1
972,715 + 16707 mRNA_8339 0.24 -0.1
972,717 + 16707 mRNA_8339 0.25 +0.3
972,719 + 16707 mRNA_8339 0.25 +0.3
972,725 + 16707 mRNA_8339 0.25 +0.8
972,838 + 16707 mRNA_8339 0.35 +0.1
972,891 + 16707 mRNA_8339 0.40 +1.1
973,193 + 16707 mRNA_8339 0.67 +0.0
973,194 - 16707 mRNA_8339 0.67 -0.6
973,195 - 16707 mRNA_8339 0.67 +0.6
973,461 - -0.1
973,461 - +0.0
973,489 + +1.2
973,620 - +2.4
973,626 + +0.7
973,635 + +0.8
973,638 - +0.3
973,640 + -4.4
973,648 + -0.0
973,653 - +0.4
973,658 + +1.6
977,479 - -0.3
977,494 + +1.1
977,496 - +0.3
977,501 - +2.3
977,536 - -2.8

Or see this region's nucleotide sequence