Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8345

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16712 and 16713 are separated by 146 nucleotides16713 and 16714 are separated by 195 nucleotides mRNA_8344: 16712 - K20308 TRAPPC11 trafficking protein particle complex subunit 11, at 984,444 to 989,069 16712 mRNA_8345: 16713 - K00062 E1.1.1.116 D-arabinose 1-dehydrogenase, at 989,216 to 990,816 16713 mRNA_8346: 16714 - Hypothetical Protein, at 991,012 to 994,561 16714

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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988,531 + 16712 mRNA_8344 0.88 -1.3
988,671 - +0.8
988,825 - +0.1
988,833 - -0.9
988,988 + -0.7
989,272 - +0.2
989,274 + +0.1
989,275 + +0.6
989,387 - 16713 mRNA_8345 0.11 -1.3
989,389 - 16713 mRNA_8345 0.11 -0.1
989,393 - 16713 mRNA_8345 0.11 +0.2
989,418 + 16713 mRNA_8345 0.13 +1.1
989,426 - 16713 mRNA_8345 0.13 +0.3
989,593 - 16713 mRNA_8345 0.24 +0.5
989,595 - 16713 mRNA_8345 0.24 -0.2
990,429 + 16713 mRNA_8345 0.76 +1.6
990,552 - 16713 mRNA_8345 0.83 +2.1
990,992 - +0.1
991,003 + -1.0
991,039 + +2.9
991,323 + -0.2
991,420 + 16714 mRNA_8346 0.11 +0.3
991,448 - 16714 mRNA_8346 0.12 -0.2
991,752 - 16714 mRNA_8346 0.21 +0.7

Or see this region's nucleotide sequence