Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8368

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16735 and 16736 are separated by 510 nucleotides16736 and 16737 are separated by 122 nucleotides mRNA_8367: 16735 - Hypothetical Protein, at 1,046,951 to 1,048,222 16735 mRNA_8368: 16736 - K07119 K07119 uncharacterized protein, at 1,048,733 to 1,050,184 16736 mRNA_8369: 16737 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011, at 1,050,307 to 1,054,065 16737

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,047,795 + 16735 mRNA_8367 0.66 -0.8
1,047,795 + 16735 mRNA_8367 0.66 -0.4
1,047,931 - 16735 mRNA_8367 0.77 +0.3
1,047,937 + 16735 mRNA_8367 0.78 +0.4
1,047,946 - 16735 mRNA_8367 0.78 -0.7
1,047,949 + 16735 mRNA_8367 0.78 +0.5
1,047,952 - 16735 mRNA_8367 0.79 +0.4
1,048,080 + 16735 mRNA_8367 0.89 -1.0
1,048,082 - 16735 mRNA_8367 0.89 -2.6
1,048,106 - +0.9
1,048,114 - -0.9
1,048,219 + +0.2
1,048,229 - -0.6
1,048,253 + +0.5
1,048,274 + +0.8
1,048,374 + +0.1
1,048,374 + -1.7
1,048,374 + -1.9
1,048,381 + +0.3
1,048,385 + -0.3
1,048,386 + +0.5
1,048,391 - +0.6
1,048,393 + -0.9
1,048,394 - +1.1
1,048,413 + -0.9
1,048,425 + -1.7
1,048,425 - +0.1
1,048,512 - +0.1
1,048,543 + +0.2
1,048,547 + +0.8
1,048,548 - +3.5
1,048,559 - +0.2
1,048,560 + +0.3
1,048,566 - -0.0
1,048,566 - -1.1
1,048,568 - +1.1
1,048,570 + +1.1
1,048,577 + -0.3
1,048,716 + -0.3
1,049,075 - 16736 mRNA_8368 0.24 -1.9
1,049,076 + 16736 mRNA_8368 0.24 -2.4
1,049,357 - 16736 mRNA_8368 0.43 +1.3
1,049,458 - 16736 mRNA_8368 0.50 -1.2
1,049,765 + 16736 mRNA_8368 0.71 +1.0
1,049,779 + 16736 mRNA_8368 0.72 +0.0
1,050,154 - +0.5
1,050,156 + -0.5
1,050,605 - +0.1

Or see this region's nucleotide sequence