Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8404

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16771 and 16772 are separated by 991 nucleotides16772 and 16773 are separated by 189 nucleotides mRNA_8403: 16771 - K08829 MAK male germ cell-associated kinase, at 1,134,667 to 1,138,585 16771 mRNA_8404: 16772 - Hypothetical Protein, at 1,139,577 to 1,141,043 16772 mRNA_8405: 16773 - K11341 YEATS4, GAS41, YAF9 YEATS domain-containing protein 4, at 1,141,233 to 1,142,255 16773

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,138,685 - +0.5
1,138,696 + -0.0
1,138,828 + -1.2
1,138,831 + +1.8
1,138,969 - +0.2
1,138,977 + +0.4
1,138,978 + -0.2
1,138,984 + -0.8
1,138,990 - +0.4
1,139,005 - +0.2
1,139,012 + +0.5
1,139,023 + -0.5
1,139,107 + -0.0
1,139,129 + -1.6
1,139,219 + +0.7
1,139,253 + -1.2
1,139,268 - +0.1
1,139,277 + -1.0
1,139,316 - +0.2
1,139,324 - +0.8
1,139,388 - +0.6
1,139,413 - +0.2
1,139,431 - +0.2
1,139,458 + -0.1
1,139,471 + -0.3
1,139,474 + -0.2
1,139,510 + +0.4
1,139,533 + -0.2
1,139,681 + +1.5
1,139,823 + 16772 mRNA_8404 0.17 -0.1
1,140,529 + 16772 mRNA_8404 0.65 +1.3
1,140,928 + +0.2
1,141,094 - -1.7
1,141,111 + +1.2

Or see this region's nucleotide sequence