Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8411

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16778 and 16779 are separated by 145 nucleotides16779 and 16780 are separated by 77 nucleotides mRNA_8410: 16778 - K12761 SNF1 carbon catabolite-derepressing protein kinase, at 1,155,634 to 1,159,160 16778 mRNA_8411: 16779 - KOG2898 Predicted phosphate acyltransferase, contains PlsC domain, at 1,159,306 to 1,160,640 16779 mRNA_8412: 16780 - KOG2504 Monocarboxylate transporter, at 1,160,718 to 1,162,780 16780

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,158,456 - 16778 mRNA_8410 0.80 -1.4
1,158,750 + 16778 mRNA_8410 0.88 +0.6
1,158,782 - 16778 mRNA_8410 0.89 +0.8
1,159,087 + -2.7
1,159,268 + +0.8
1,159,292 + -0.9
1,159,361 + -0.7
1,159,506 + 16779 mRNA_8411 0.15 -1.2
1,159,628 - 16779 mRNA_8411 0.24 +1.5
1,159,660 - 16779 mRNA_8411 0.27 +0.5
1,159,661 - 16779 mRNA_8411 0.27 +1.7
1,159,751 - 16779 mRNA_8411 0.33 +0.7
1,159,824 - 16779 mRNA_8411 0.39 -0.7
1,159,982 + 16779 mRNA_8411 0.51 +0.1
1,160,032 + 16779 mRNA_8411 0.54 +0.9
1,160,072 + 16779 mRNA_8411 0.57 -0.6
1,160,134 - 16779 mRNA_8411 0.62 +0.8
1,160,190 - 16779 mRNA_8411 0.66 +2.0
1,160,194 - 16779 mRNA_8411 0.67 -0.1
1,160,210 + 16779 mRNA_8411 0.68 -1.1
1,160,332 - 16779 mRNA_8411 0.77 +0.0
1,160,365 + 16779 mRNA_8411 0.79 +0.6
1,160,377 + 16779 mRNA_8411 0.80 -0.2
1,160,514 - +0.6
1,160,525 + -0.5
1,160,530 + -1.7
1,160,542 + -0.3
1,160,677 + +0.6
1,160,681 + +1.7
1,160,813 + -3.9
1,160,813 + -0.5
1,160,823 - -1.7
1,160,825 + -0.1
1,160,834 - +0.0
1,160,834 + +0.4
1,160,962 - 16780 mRNA_8412 0.12 -1.0
1,160,996 + 16780 mRNA_8412 0.13 -0.7
1,161,069 - 16780 mRNA_8412 0.17 +0.0
1,161,239 - 16780 mRNA_8412 0.25 +0.2
1,161,264 - 16780 mRNA_8412 0.26 +0.7
1,161,452 + 16780 mRNA_8412 0.36 +1.0
1,161,535 - 16780 mRNA_8412 0.40 -0.4
1,161,575 - 16780 mRNA_8412 0.42 -0.4

Or see this region's nucleotide sequence