Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8416

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16783 and 16784 are separated by 718 nucleotides16784 and 16785 are separated by 391 nucleotides mRNA_8415: 16783 - Hypothetical Protein, at 1,166,198 to 1,166,736 16783 mRNA_8416: 16784 - BLAST Protein byr4 [Hypsizygus marmoreus], at 1,167,455 to 1,171,070 16784 mRNA_8417: 16785 - Hypothetical Protein, at 1,171,462 to 1,173,303 16785

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,166,672 + 16783 mRNA_8415 0.88 +0.3
1,166,780 - +2.0
1,166,793 - +1.6
1,167,096 + +0.9
1,167,131 + -0.5
1,167,133 - -0.1
1,167,135 - +0.3
1,167,154 - +1.5
1,167,254 - -0.5
1,167,311 + +1.3
1,167,380 - +0.1
1,167,416 + -0.2
1,167,564 - +1.4
1,167,727 - +1.0
1,167,728 - -1.0
1,168,152 - 16784 mRNA_8416 0.19 +0.1
1,168,152 + 16784 mRNA_8416 0.19 -0.1
1,168,174 - 16784 mRNA_8416 0.20 -0.4
1,168,215 + 16784 mRNA_8416 0.21 -0.9
1,168,218 - 16784 mRNA_8416 0.21 -1.5
1,168,233 - 16784 mRNA_8416 0.22 +0.2
1,168,454 + 16784 mRNA_8416 0.28 -1.6
1,168,472 - 16784 mRNA_8416 0.28 -0.2
1,168,491 + 16784 mRNA_8416 0.29 +0.4
1,168,494 - 16784 mRNA_8416 0.29 +0.4
1,168,494 - 16784 mRNA_8416 0.29 -0.6
1,168,497 - 16784 mRNA_8416 0.29 -1.8
1,168,638 + 16784 mRNA_8416 0.33 -1.1
1,168,730 + 16784 mRNA_8416 0.35 +1.3
1,168,806 - 16784 mRNA_8416 0.37 -0.1
1,168,946 + 16784 mRNA_8416 0.41 +0.4
1,168,978 + 16784 mRNA_8416 0.42 +0.1
1,169,033 - 16784 mRNA_8416 0.44 +1.5
1,169,039 + 16784 mRNA_8416 0.44 +1.0
1,169,042 + 16784 mRNA_8416 0.44 +0.5
1,169,170 + 16784 mRNA_8416 0.47 -0.7
1,169,201 + 16784 mRNA_8416 0.48 -0.2
1,169,203 - 16784 mRNA_8416 0.48 +0.4
1,169,204 + 16784 mRNA_8416 0.48 +1.6
1,169,209 - 16784 mRNA_8416 0.49 +0.2
1,169,209 + 16784 mRNA_8416 0.49 -0.0
1,169,242 + 16784 mRNA_8416 0.49 +0.5
1,169,242 + 16784 mRNA_8416 0.49 +1.5
1,169,326 - 16784 mRNA_8416 0.52 +0.2
1,169,338 - 16784 mRNA_8416 0.52 +0.8
1,169,339 - 16784 mRNA_8416 0.52 -0.1
1,169,346 - 16784 mRNA_8416 0.52 +0.3
1,169,489 + 16784 mRNA_8416 0.56 -0.1
1,169,550 + 16784 mRNA_8416 0.58 +0.7
1,169,884 + 16784 mRNA_8416 0.67 +0.0
1,169,892 - 16784 mRNA_8416 0.67 -0.3
1,170,366 - 16784 mRNA_8416 0.81 +0.6
1,170,481 - 16784 mRNA_8416 0.84 -0.0
1,170,517 + 16784 mRNA_8416 0.85 +0.5
1,170,517 - 16784 mRNA_8416 0.85 -1.0
1,170,594 - 16784 mRNA_8416 0.87 -0.1
1,170,594 - 16784 mRNA_8416 0.87 +1.0
1,170,643 - 16784 mRNA_8416 0.88 +1.9
1,170,657 - 16784 mRNA_8416 0.89 +1.2
1,170,695 + 16784 mRNA_8416 0.90 +1.0
1,170,808 - +1.4
1,170,828 - -1.7
1,170,987 - +0.7
1,171,002 - +0.5
1,171,084 - +0.3
1,171,119 + +0.0
1,171,143 + -0.6
1,171,154 + -0.4
1,171,179 - -0.0
1,171,194 - +1.4
1,171,201 - +1.6
1,171,543 + -1.1
1,171,549 + -0.5
1,171,552 - +0.2
1,171,562 + +0.9
1,171,684 - 16785 mRNA_8417 0.12 -0.4
1,172,032 + 16785 mRNA_8417 0.31 -0.6

Or see this region's nucleotide sequence