Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_149

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8516 and 8517 are separated by 408 nucleotides8517 and 8518 are separated by 419 nucleotides mRNA_148: 8516 - KOG0254 Predicted transporter (major facilitator superfamily), at 372,141 to 374,463 8516 mRNA_149: 8517 - Hypothetical Protein, at 374,872 to 375,333 8517 mRNA_150: 8518 - HMMPfam-Beta-glucan synthesis-associated protein (SKN1)-PF03935,SUPERFAMILY--SSF49899, at 375,753 to 378,108 8518

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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374,013 - 8516 mRNA_148 0.81 +0.6
374,153 + 8516 mRNA_148 0.87 +0.9
374,189 - 8516 mRNA_148 0.88 +0.3
374,197 + 8516 mRNA_148 0.89 +1.8
374,342 + +2.1
374,366 - +1.5
374,373 - -1.2
374,381 - +0.2
374,409 - +0.4
374,491 + +0.2
374,495 - -1.7
374,513 - -0.8
374,513 - -0.8
374,521 - +1.5
374,533 + +0.1
374,533 - -0.2
374,541 - +0.1
374,560 + -0.5
374,566 - -0.9
374,570 - +0.4
374,575 + -0.3
374,594 + +0.5
374,594 + +0.1
374,614 + +0.4
374,621 - +0.7
374,627 + -1.3
374,627 + -1.6
374,639 - +1.2
374,659 - +0.2
374,659 - -0.4
374,659 - +0.3
374,663 - +1.5
374,664 + +0.0
374,668 - +2.0
374,671 - +0.9
374,675 + +1.6
374,683 + -0.9
374,684 + +0.4
374,684 + +0.8
374,685 + +0.2
374,687 + +0.3
374,695 - +1.1
374,696 + +0.2
374,719 - +0.9
374,726 + +0.2
374,741 + -0.1
374,759 - +0.0
374,820 + +0.1
374,824 - +0.7
374,942 - 8517 mRNA_149 0.15 +0.8
374,983 + 8517 mRNA_149 0.24 -0.4
375,100 + 8517 mRNA_149 0.49 +0.7
375,131 + 8517 mRNA_149 0.56 +0.8
375,138 + 8517 mRNA_149 0.58 +0.6
375,140 + 8517 mRNA_149 0.58 +1.2
375,249 + 8517 mRNA_149 0.82 +1.3
375,258 + 8517 mRNA_149 0.84 -0.5
376,011 + 8518 mRNA_150 0.11 -0.8
376,300 - 8518 mRNA_150 0.23 -0.0

Or see this region's nucleotide sequence