Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_156

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8523 and 8524 are separated by 332 nucleotides8524 and 8525 are separated by 679 nucleotides mRNA_155: 8523 - K20069 NECAP1_2 adaptin ear-binding coat-associated protein 1/2, at 388,626 to 389,791 8523 mRNA_156: 8524 - Hypothetical Protein, at 390,124 to 390,698 8524 mRNA_157: 8525 - KOG3066 Translin-associated protein X, at 391,378 to 392,552 8525

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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389,314 + 8523 mRNA_155 0.59 -0.7
389,341 - 8523 mRNA_155 0.61 -0.7
389,435 + 8523 mRNA_155 0.69 -0.1
389,578 + 8523 mRNA_155 0.82 +0.1
389,884 + -0.5
389,902 + +0.1
389,911 + +0.6
390,178 + +0.8
390,182 + 8524 mRNA_156 0.10 +0.6
390,283 - 8524 mRNA_156 0.28 -0.2
390,482 - 8524 mRNA_156 0.62 +0.7
390,609 - 8524 mRNA_156 0.84 +0.0
390,880 - -0.0
390,882 + -0.1
390,886 - +0.5
390,898 - -0.4
391,195 + -1.0
391,614 - 8525 mRNA_157 0.20 -0.2
391,615 + 8525 mRNA_157 0.20 +2.2
391,654 + 8525 mRNA_157 0.23 +1.2

Or see this region's nucleotide sequence