Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_211

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8578 and 8579 are separated by 357 nucleotides8579 and 8580 are separated by 645 nucleotides mRNA_210: 8578 - K08675 PRSS15, PIM1 Lon-like ATP-dependent protease, at 515,116 to 519,191 8578 mRNA_211: 8579 - K00432 gpx glutathione peroxidase, at 519,549 to 520,466 8579 mRNA_212: 8580 - K01194 TREH, treA, treF alpha,alpha-trehalase, at 521,112 to 523,919 8580

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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519,554 + +0.3
520,547 - -0.3
520,564 + +1.1
520,690 + +0.6
520,708 + +2.3
520,816 - -0.2
520,831 + +1.2
520,833 + -0.7
520,836 + -0.7
520,838 - +1.6
520,842 + +2.1
520,847 - -0.2
520,851 - +1.4
520,853 - -0.2
520,855 + -0.3
520,867 + +0.5
520,867 + -0.2
520,886 - -0.3
520,886 - +0.9
520,887 + +0.3
520,893 - -2.0
520,948 - +0.5
520,984 - +1.7
521,019 - -0.4
521,032 - -0.0
521,108 - +0.8
521,120 - +0.4
521,273 - +0.5
521,309 - +0.1

Or see this region's nucleotide sequence