Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_223

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8590 and 8591 are separated by 210 nucleotides mRNA_222: 8590 - K12795 SUGT1, SGT1 suppressor of G2 allele of SKP1, at 547,787 to 548,767 8590 mRNA_223: 8591 - HMMPfam-Protein of unknown function (DUF1212)-PF06738,HMMPfam-Protein of unknown function (DUF3815)-PF12821, at 548,978 to 553,115 8591

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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548,785 - -1.2
548,797 + -0.1
548,809 + -1.4
548,827 + +0.4
549,522 + 8591 mRNA_223 0.13 +0.7
549,685 - 8591 mRNA_223 0.17 -0.9
549,754 + 8591 mRNA_223 0.19 +0.2
549,828 + 8591 mRNA_223 0.21 -0.1
550,224 + 8591 mRNA_223 0.30 +0.1
550,308 - 8591 mRNA_223 0.32 +0.1
550,417 + 8591 mRNA_223 0.35 +0.0
550,551 - 8591 mRNA_223 0.38 -0.3
550,574 - 8591 mRNA_223 0.39 +0.7
550,905 + 8591 mRNA_223 0.47 +0.7
550,981 - 8591 mRNA_223 0.48 +0.3
551,135 - 8591 mRNA_223 0.52 -0.5
551,325 - 8591 mRNA_223 0.57 -0.1
551,581 - 8591 mRNA_223 0.63 -0.1
551,733 - 8591 mRNA_223 0.67 +0.2
552,168 - 8591 mRNA_223 0.77 +0.5
552,453 - 8591 mRNA_223 0.84 +0.2
552,765 + -0.6
552,910 + +1.0
552,950 - +0.4
553,042 - +0.9
553,211 + +2.0
553,253 + +0.5
553,271 - +0.1
553,273 - +0.2
553,862 - +0.6
553,866 + +0.4
553,869 + -0.9
553,884 + -0.4
553,884 + +0.5
553,890 + +0.9
553,960 - +0.5

Or see this region's nucleotide sequence