Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_224

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8592 and 8593 are separated by 423 nucleotides mRNA_224: 8592 - K07300 chaA, CAX Ca2+-H+ antiporter, at 554,235 to 556,538 8592 mRNA_225: 8593 - KOG0619 FOG Leucine rich repeat, at 556,962 to 559,070 8593

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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553,253 + +0.5
553,271 - +0.1
553,273 - +0.2
553,862 - +0.6
553,866 + +0.4
553,869 + -0.9
553,884 + -0.4
553,884 + +0.5
553,890 + +0.9
553,960 - +0.5
554,553 + 8592 mRNA_224 0.14 -2.7
555,256 - 8592 mRNA_224 0.44 -1.6
556,428 - +0.1
556,431 + -0.7
556,459 - -0.4
556,737 - -0.3
556,740 + +0.6
556,741 + +2.3
556,744 - -0.6
556,745 + -0.4
556,745 + +1.8
556,746 - -0.1
556,764 - +0.0
556,766 + +0.7
556,769 - +0.8
556,770 + +0.4
556,793 - +1.6
556,924 - -1.2
556,946 - +0.3
556,981 + -0.1

Or see this region's nucleotide sequence