Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_251

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8618 and 8619 are separated by 136 nucleotides8619 and 8620 are separated by 168 nucleotides mRNA_250: 8618 - K19245 JLP1 sulfonate dioxygenase, at 607,313 to 608,781 8618 mRNA_251: 8619 - HMMPfam-ACT domain-PF13840,PIRSF--PIRSF008459,SUPERFAMILY--SSF55021, at 608,918 to 609,439 8619 mRNA_252: 8620 - Hypothetical Protein, at 609,608 to 610,870 8620

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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608,001 - 8618 mRNA_250 0.47 +1.2
608,030 - 8618 mRNA_250 0.49 +1.4
608,059 + 8618 mRNA_250 0.51 +2.1
608,200 - 8618 mRNA_250 0.60 -0.0
608,209 + 8618 mRNA_250 0.61 -0.3
608,331 - 8618 mRNA_250 0.69 +2.0
608,627 - 8618 mRNA_250 0.89 -0.0
608,633 + 8618 mRNA_250 0.90 -1.8
608,925 + +1.9
609,181 - 8619 mRNA_251 0.50 +0.1
609,190 + 8619 mRNA_251 0.52 -3.4
609,356 - 8619 mRNA_251 0.84 -0.7
609,358 - 8619 mRNA_251 0.84 +0.8
609,376 - 8619 mRNA_251 0.88 +1.4
609,487 - +0.3
609,496 + -0.5
609,498 - -0.3
609,498 + +1.5
609,573 + +0.4
609,642 - +0.7
609,652 - +0.5
609,667 + +1.6
609,695 + -0.5
609,958 + 8620 mRNA_252 0.28 +1.5
609,963 + 8620 mRNA_252 0.28 +0.0
610,016 + 8620 mRNA_252 0.32 +0.7
610,018 - 8620 mRNA_252 0.32 +0.5
610,292 - 8620 mRNA_252 0.54 +0.1

Or see this region's nucleotide sequence