Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_367

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8734 and 8735 are separated by 569 nucleotides8735 and 8736 are separated by 99 nucleotides mRNA_366: 8734 - HMMPfam-Thioredoxin-like-PF13905,SUPERFAMILY--SSF52833, at 849,261 to 850,411 8734 mRNA_367: 8735 - ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 850,981 to 853,734 8735 mRNA_368: 8736 - KOG2100 Dipeptidyl aminopeptidase, at 853,834 to 856,786 8736

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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850,015 - 8734 mRNA_366 0.66 +0.1
850,162 - 8734 mRNA_366 0.78 -0.9
850,460 - -0.7
850,470 + +0.5
850,483 + -0.8
850,486 + +2.8
850,599 - -0.7
850,605 - +0.0
850,619 - -0.2
850,621 + -1.4
850,751 + -0.5
850,776 - -0.9
850,783 - +0.7
850,791 + +0.4
850,795 - -0.7
850,810 - -0.9
850,814 + +2.1
850,817 - +0.4
850,828 + +0.5
850,932 + +1.4
851,013 + -1.5
851,084 + +0.9
851,144 - +0.4
851,255 - +0.4
851,651 - 8735 mRNA_367 0.24 +0.1
851,671 - 8735 mRNA_367 0.25 +0.2
851,683 + 8735 mRNA_367 0.25 +0.4
851,732 - 8735 mRNA_367 0.27 -0.3
851,920 - 8735 mRNA_367 0.34 -1.0
851,950 - 8735 mRNA_367 0.35 +0.5
852,092 + 8735 mRNA_367 0.40 +2.4
852,544 - 8735 mRNA_367 0.57 +1.2
853,299 + 8735 mRNA_367 0.84 -0.6
853,611 - +1.3
854,038 + +0.4
854,069 + -0.1
854,183 - 8736 mRNA_368 0.12 -0.4
854,317 + 8736 mRNA_368 0.16 -0.5

Or see this region's nucleotide sequence