Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_479

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8846 and 8847 are separated by 644 nucleotides8847 and 8848 are separated by 527 nucleotides mRNA_478: 8846 - HMMPfam-Tetratricopeptide repeat-PF07719,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 1,111,046 to 1,113,487 8846 mRNA_479: 8847 - K17302 COPB2, SEC27 coatomer subunit beta', at 1,114,132 to 1,117,214 8847 mRNA_480: 8848 - ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SUPERFAMILY--SSF46689, at 1,117,742 to 1,121,401 8848

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,113,142 - 8846 mRNA_478 0.86 +0.3
1,113,285 - -1.5
1,113,450 - -1.7
1,113,612 - +0.1
1,113,626 - -0.0
1,113,737 - -0.2
1,113,742 - +0.5
1,113,864 - -1.0
1,114,047 + +1.2
1,114,074 - -0.1
1,114,359 - +0.4
1,117,384 - -0.2
1,117,534 - +1.1
1,117,539 - -0.6
1,117,557 + -0.3
1,117,564 + -0.3
1,117,573 - +0.3
1,117,584 + -0.2
1,117,587 + -0.6
1,117,701 - -0.5
1,117,719 + +0.3
1,117,720 + +0.6
1,117,739 - +0.4
1,117,746 + -0.3
1,117,853 - +0.4
1,117,855 - +0.9
1,117,866 + +0.3
1,117,868 - +0.4
1,117,881 + +0.6
1,117,885 + +0.4
1,118,026 + +0.4
1,118,030 + -2.1
1,118,043 + -0.1
1,118,058 + +0.6
1,118,063 + -0.1

Or see this region's nucleotide sequence