Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_523

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8890 and 8891 are separated by 197 nucleotides8891 and 8892 are separated by 283 nucleotides mRNA_522: 8890 - K13026 DHX57 ATP-dependent RNA helicase DHX57, at 1,238,854 to 1,244,185 8890 mRNA_523: 8891 - K11644 SIN3A paired amphipathic helix protein Sin3a, at 1,244,383 to 1,249,643 8891 mRNA_524: 8892 - KOG0519 Sensory transduction histidine kinase, at 1,249,927 to 1,253,514 8892

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,244,016 + +0.9
1,244,024 - +0.6
1,244,140 + +0.0
1,244,159 - +1.6
1,244,159 - -0.6
1,244,289 + +0.4
1,244,317 + +0.6
1,247,440 + 8891 mRNA_523 0.58 +2.5
1,247,605 - 8891 mRNA_523 0.61 +0.8
1,248,731 - 8891 mRNA_523 0.83 +1.2
1,249,220 + +0.8
1,249,497 - +0.4
1,249,520 + -0.1
1,249,735 + +1.5
1,249,746 - -0.4
1,249,762 + +0.7
1,249,774 - -1.4
1,249,965 + -0.4
1,249,973 + +0.2
1,250,098 - +0.2
1,250,111 + -0.5
1,250,251 + +0.8
1,250,267 - -1.2
1,250,294 - 8892 mRNA_524 0.10 +1.9
1,250,301 + 8892 mRNA_524 0.10 +0.1
1,250,308 + 8892 mRNA_524 0.11 -2.2

Or see this region's nucleotide sequence