Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_526

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8893 and 8894 are separated by 312 nucleotides mRNA_525: 8893 - K01265 map methionyl aminopeptidase, at 1,253,926 to 1,255,834 8893 mRNA_526: 8894 - K02915 RP-L34e, RPL34 large subunit ribosomal protein L34e, at 1,256,147 to 1,256,994 8894

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,255,262 - 8893 mRNA_525 0.70 +0.2
1,255,375 - 8893 mRNA_525 0.76 -0.7
1,255,406 + 8893 mRNA_525 0.78 +0.9
1,255,541 + 8893 mRNA_525 0.85 -0.6
1,255,692 - +0.4
1,255,701 + +1.5
1,255,702 + +0.4
1,255,824 - +1.3
1,256,006 - +0.7
1,256,014 + -1.7
1,256,015 + -0.0
1,256,030 - +0.6
1,256,408 + 8894 mRNA_526 0.31 +1.6
1,257,374 + +0.4
1,257,503 + -0.5
1,257,506 - +1.3
1,257,521 - -0.1
1,257,529 - +0.7
1,257,646 - -0.1
1,257,651 - -0.8
1,257,653 - -0.7
1,257,654 - +0.2
1,257,677 - +0.7
1,257,685 + +0.1
1,257,809 - +0.5
1,257,841 - +0.7
1,257,848 + +0.6
1,257,968 - -0.2

Or see this region's nucleotide sequence