Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_585

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8952 and 8953 are separated by 314 nucleotides8953 and 8954 are separated by 164 nucleotides mRNA_584: 8952 - K01259 pip proline iminopeptidase, at 1,394,806 to 1,396,431 8952 mRNA_585: 8953 - HMMPfam-Polynucleotide kinase 3 phosphatase-PF08645,HMMPfam-AAA domain-PF13671,SUPERFAMILY--SSF52540,SUPERFAMILY--SSF56784, at 1,396,746 to 1,398,490 8953 mRNA_586: 8954 - K20291 COG4, COD1 conserved oligomeric Golgi complex subunit 4, at 1,398,655 to 1,401,525 8954

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,395,872 + 8952 mRNA_584 0.66 +0.5
1,396,112 - 8952 mRNA_584 0.80 -0.3
1,396,135 + 8952 mRNA_584 0.82 -0.1
1,396,294 - +0.6
1,396,313 + -0.5
1,396,417 + +0.6
1,396,429 - -0.1
1,396,430 + +0.2
1,396,436 + +0.8
1,396,440 + -1.3
1,396,739 - -0.1
1,396,754 - +0.2
1,397,025 - 8953 mRNA_585 0.16 +1.2
1,397,048 + 8953 mRNA_585 0.17 +1.0
1,397,318 + 8953 mRNA_585 0.33 +1.0
1,397,341 - 8953 mRNA_585 0.34 +0.8
1,397,474 - 8953 mRNA_585 0.42 +0.4
1,397,506 - 8953 mRNA_585 0.44 -1.0
1,397,776 - 8953 mRNA_585 0.59 +0.7
1,397,919 + 8953 mRNA_585 0.67 -1.3
1,398,692 - -0.2

Or see this region's nucleotide sequence