Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_665

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9032 and 9033 are separated by 260 nucleotides9033 and 9034 are separated by 60 nucleotides mRNA_664: 9032 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,SUPERFAMILY--SSF51197, at 1,596,651 to 1,602,461 9032 mRNA_665: 9033 - K08853 AAK AP2-associated kinase, at 1,602,722 to 1,607,021 9033 mRNA_666: 9034 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 1,607,082 to 1,608,088 9034

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,602,088 - -0.7
1,602,184 - +1.6
1,602,199 - +0.2
1,602,214 + +0.4
1,602,226 + +1.0
1,602,239 + -0.2
1,602,525 - -0.4
1,602,662 - +1.9
1,602,672 + +0.0
1,602,674 + +1.1
1,602,932 + -0.9
1,603,828 - 9033 mRNA_665 0.26 -4.7
1,603,832 + 9033 mRNA_665 0.26 -3.0
1,604,097 + 9033 mRNA_665 0.32 +1.1
1,604,731 - 9033 mRNA_665 0.47 -0.5
1,605,023 - 9033 mRNA_665 0.54 +0.3
1,606,306 + 9033 mRNA_665 0.83 +0.7
1,607,148 - +0.9
1,607,636 + 9034 mRNA_666 0.55 -0.5
1,607,775 - 9034 mRNA_666 0.69 +1.3
1,607,926 - 9034 mRNA_666 0.84 -0.5

Or see this region's nucleotide sequence