Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_668

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9035 and 9036 are separated by 277 nucleotides9036 and 9037 are separated by 667 nucleotides mRNA_667: 9035 - Interpro Ribosome associated membrane protein RAMP4, at 1,608,200 to 1,608,918 9035 mRNA_668: 9036 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 1,609,196 to 1,610,811 9036 mRNA_669: 9037 - K01689 ENO, eno enolase, at 1,611,479 to 1,614,227 9037

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,608,270 + +0.8
1,608,373 - 9035 mRNA_667 0.24 +0.6
1,608,394 - 9035 mRNA_667 0.27 -0.7
1,608,398 - 9035 mRNA_667 0.28 -0.9
1,608,402 - 9035 mRNA_667 0.28 +0.4
1,608,412 + 9035 mRNA_667 0.29 +0.8
1,608,473 + 9035 mRNA_667 0.38 -1.3
1,608,541 - 9035 mRNA_667 0.47 +0.6
1,608,545 - 9035 mRNA_667 0.48 +0.0
1,608,557 + 9035 mRNA_667 0.50 -0.2
1,608,694 - 9035 mRNA_667 0.69 +0.3
1,609,010 + +0.0
1,609,051 + -2.2
1,609,132 - +2.9
1,609,144 + -1.0
1,609,162 - +1.1
1,609,179 + +1.0
1,609,288 + +0.1
1,609,321 - +1.4
1,609,381 - 9036 mRNA_668 0.11 +0.1
1,609,530 - 9036 mRNA_668 0.21 -1.1
1,609,601 + 9036 mRNA_668 0.25 -0.7
1,609,603 - 9036 mRNA_668 0.25 +0.5
1,609,739 - 9036 mRNA_668 0.34 +0.2
1,609,938 - 9036 mRNA_668 0.46 -0.3
1,610,161 - 9036 mRNA_668 0.60 +1.5
1,610,164 - 9036 mRNA_668 0.60 -0.9
1,610,209 - 9036 mRNA_668 0.63 +1.3
1,610,568 - 9036 mRNA_668 0.85 +0.8
1,610,578 + 9036 mRNA_668 0.86 -0.1
1,610,579 + 9036 mRNA_668 0.86 +0.7
1,610,603 + 9036 mRNA_668 0.87 -2.1
1,610,725 - +0.4
1,610,827 - +2.1
1,610,859 - +2.5
1,610,893 + -0.4
1,610,915 - +0.7
1,610,932 - +0.5
1,611,075 + -0.2
1,611,192 + +0.3
1,611,192 + -1.6
1,611,192 - +1.1
1,611,243 + -0.2
1,611,348 + +0.7
1,611,444 - -1.5
1,611,450 + +0.4
1,611,453 - +0.2
1,611,458 + +0.2
1,611,460 + -0.7
1,611,498 - +0.8
1,611,504 - -0.1
1,611,507 + -0.3
1,611,512 - -0.0
1,611,569 - +0.9
1,611,617 + +0.9
1,611,624 - +0.5
1,611,645 + +0.0
1,611,664 + +0.2
1,611,664 - -0.5

Or see this region's nucleotide sequence