Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_702

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9069 and 9070 are separated by 500 nucleotides mRNA_701: 9069 - K08776 NPEPPS puromycin-sensitive aminopeptidase, at 1,674,327 to 1,678,341 9069 mRNA_702: 9070 - BLAST RAN guanine nucleotide release factor [Moesziomyces a..., at 1,678,842 to 1,679,928 9070

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,677,904 - 9069 mRNA_701 0.89 -0.3
1,677,966 + +1.3
1,678,209 + +1.0
1,678,449 - +2.1
1,678,521 - -1.0
1,678,524 + -1.7
1,678,539 + +1.1
1,678,593 - +0.6
1,678,637 - +0.2
1,678,646 + -0.7
1,678,662 - +0.1
1,678,665 + +0.3
1,678,684 + +0.6
1,678,692 - -0.2
1,678,697 - +0.6
1,678,697 + +0.9
1,678,704 - +0.5
1,678,715 - +0.7
1,678,720 + -1.0
1,678,729 + +0.2
1,678,732 - +0.4
1,678,738 + +0.3
1,678,860 - +1.3
1,679,003 - 9070 mRNA_702 0.15 +0.7
1,679,888 - +0.3
1,679,888 + -0.5
1,680,120 - +0.2
1,680,130 + -0.5
1,680,420 - +1.2
1,680,735 + +1.1
1,680,741 + +1.1
1,680,743 - +0.7
1,680,827 - -0.7
1,680,865 + -0.0
1,680,884 - +1.4
1,680,886 + +1.8

Or see this region's nucleotide sequence