Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_760

Experiment: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9127 and 9128 are separated by 394 nucleotides9128 and 9129 are separated by 135 nucleotides mRNA_759: 9127 - K08486 STX1B_2_3 syntaxin 1B/2/3, at 1,813,341 to 1,815,378 9127 mRNA_760: 9128 - Interpro UDP-glucose-Glycoprotein Glucosyltransferase UDP-glucose-Glycoprotein Glucosyltransferase UDP-glucose-Glycoprotein Glucosyltransferase, at 1,815,773 to 1,818,752 9128 mRNA_761: 9129 - KOG2919 Guanine nucleotide-binding protein, at 1,818,888 to 1,820,583 9129

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
1,815,456 + +1.1
1,815,715 - +0.5
1,815,724 + +0.4
1,815,732 + +1.6
1,815,735 + +0.6
1,815,735 - +0.2
1,815,762 - +0.3
1,815,783 + +1.0
1,815,791 + +0.2
1,815,896 + +2.2
1,815,922 + +0.0
1,816,118 + 9128 mRNA_760 0.12 +0.6
1,816,416 + 9128 mRNA_760 0.22 -0.3
1,816,641 - 9128 mRNA_760 0.29 +1.6
1,816,646 - 9128 mRNA_760 0.29 -0.9
1,816,655 - 9128 mRNA_760 0.30 +2.2
1,816,770 - 9128 mRNA_760 0.33 +0.3
1,817,072 + 9128 mRNA_760 0.44 -1.2
1,817,072 + 9128 mRNA_760 0.44 +0.8
1,817,297 + 9128 mRNA_760 0.51 +0.4
1,817,447 - 9128 mRNA_760 0.56 +2.3
1,817,667 + 9128 mRNA_760 0.64 +1.1
1,818,112 + 9128 mRNA_760 0.78 +0.9
1,818,194 + 9128 mRNA_760 0.81 +0.8
1,818,598 - -0.1
1,818,641 - -0.5
1,818,727 - -0.3
1,818,743 + -0.1
1,819,152 - 9129 mRNA_761 0.16 +0.8
1,819,245 - 9129 mRNA_761 0.21 +2.7
1,819,256 - 9129 mRNA_761 0.22 -0.5
1,819,597 - 9129 mRNA_761 0.42 +0.8

Or see this region's nucleotide sequence