Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_773

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9139 and 9140 overlap by 13 nucleotides9140 and 9141 are separated by 460 nucleotides mRNA_771: 9139 - KOG0254 Predicted transporter (major facilitator superfamily), at 1,837,244 to 1,837,694 9139 mRNA_772: 9140 - Hypothetical Protein, at 1,837,682 to 1,837,975 9140 mRNA_773: 9141 - BLAST alpha,alpha-trehalase [Microbotryum lychnidis-dioicae..., at 1,838,436 to 1,839,062 9141

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,837,612 - 9139 mRNA_771 0.82 +1.1
1,837,874 + 9140 mRNA_772 0.65 +0.4
1,837,906 + 9140 mRNA_772 0.76 +1.0
1,838,047 - +0.6
1,838,051 - +0.6
1,838,068 - +0.5
1,838,068 + +0.2
1,838,070 + -1.1
1,838,071 + +1.2
1,838,074 - +1.5
1,838,085 - -2.2
1,838,088 - +0.1
1,838,090 + +0.1
1,838,090 + -1.1
1,838,090 + +0.0
1,838,090 + -0.5
1,838,090 + +0.0
1,838,090 - +0.3
1,838,091 - +0.3
1,838,094 + +0.0
1,838,094 + +0.4
1,838,171 + -0.2
1,838,219 - +0.3
1,838,220 - +0.2
1,838,222 + +0.9
1,838,230 - +0.5
1,838,233 + -0.8
1,838,373 + +0.3
1,838,508 + 9141 mRNA_773 0.11 +0.7
1,838,510 + 9141 mRNA_773 0.12 +0.2
1,838,563 - 9141 mRNA_773 0.20 +0.5
1,838,662 - 9141 mRNA_773 0.36 -0.1
1,838,961 - 9141 mRNA_773 0.84 +0.2
1,839,079 - +0.3
1,839,089 + +0.7
1,839,097 + +0.3
1,839,107 + +0.3
1,839,256 - +0.6
1,839,257 + +0.0
1,839,271 + +2.1
1,839,315 + -0.1
1,839,394 - +1.3
1,839,401 + +0.7
1,839,403 + -0.9
1,839,404 - -0.2
1,839,430 - -0.3
1,839,464 + +0.7
1,839,471 + +0.9
1,839,475 + +0.5
1,839,503 - -0.1
1,839,510 + +1.1
1,839,515 + +1.5
1,839,646 + -0.3
1,839,686 + -0.2

Or see this region's nucleotide sequence