Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_836

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9203 and 9204 are separated by 292 nucleotides9204 and 9205 are separated by 300 nucleotides mRNA_835: 9203 - K16365 SGTA small glutamine-rich tetratricopeptide repeat-containing protein alpha, at 1,999,158 to 2,000,866 9203 mRNA_836: 9204 - K17387 KIF23 kinesin family member 23, at 2,001,159 to 2,005,251 9204 mRNA_837: 9205 - KOG2061 Uncharacterized MYND Zn-finger protein, at 2,005,552 to 2,007,276 9205

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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2,000,292 - 9203 mRNA_835 0.66 +2.1
2,000,355 - 9203 mRNA_835 0.70 +0.6
2,000,601 - 9203 mRNA_835 0.84 +0.5
2,000,607 + 9203 mRNA_835 0.85 +1.4
2,000,748 + +1.1
2,000,748 + +0.3
2,000,758 + +0.7
2,000,891 - +0.9
2,000,895 + +0.1
2,000,921 - +0.3
2,001,235 - +0.8
2,001,294 - -0.1
2,001,304 + +0.1
2,001,350 - +2.5
2,001,459 - -0.9
2,001,569 + 9204 mRNA_836 0.10 -0.9
2,001,611 - 9204 mRNA_836 0.11 -0.3
2,001,630 + 9204 mRNA_836 0.12 -1.1
2,001,752 - 9204 mRNA_836 0.14 +0.4
2,001,772 - 9204 mRNA_836 0.15 -0.2
2,005,032 - -1.0
2,005,396 + +1.7

Or see this region's nucleotide sequence