Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_845

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9212 and 9213 are separated by 568 nucleotides9213 and 9214 are separated by 774 nucleotides mRNA_844: 9212 - KOG1111 N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase, at 2,022,494 to 2,024,852 9212 mRNA_845: 9213 - KOG3346 Phosphatidylethanolamine binding protein, at 2,025,421 to 2,026,759 9213 mRNA_846: 9214 - KOG2710 Rho GTPase-activating protein, at 2,027,534 to 2,029,466 9214

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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2,024,475 - 9212 mRNA_844 0.84 -0.4
2,024,488 + 9212 mRNA_844 0.85 -1.3
2,024,951 + +2.0
2,024,969 + +0.0
2,025,087 - +0.7
2,025,125 - +0.3
2,025,285 + +2.8
2,025,401 - +0.6
2,025,404 - +0.3
2,025,412 + +0.1
2,025,594 - 9213 mRNA_845 0.13 +0.9
2,025,852 + 9213 mRNA_845 0.32 +0.2
2,026,343 - 9213 mRNA_845 0.69 +0.2
2,026,402 + 9213 mRNA_845 0.73 +0.7
2,026,444 + 9213 mRNA_845 0.76 +0.3
2,026,451 + 9213 mRNA_845 0.77 +0.1
2,026,556 - 9213 mRNA_845 0.85 +1.3
2,026,686 - +0.7
2,026,688 - -0.4
2,026,852 - -0.3
2,026,863 + +0.6
2,026,865 - -0.1
2,027,000 - +0.1
2,027,161 + +0.5
2,027,169 + +0.4
2,027,321 + +2.3

Or see this region's nucleotide sequence