Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_876

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9243 and 9244 are separated by 678 nucleotides9244 and 9245 are separated by 804 nucleotides mRNA_875: 9243 - KOG2401 Predicted MutS-related protein involved in mismatch repair, at 2,086,661 to 2,088,947 9243 mRNA_876: 9244 - K00297 metF, MTHFR methylenetetrahydrofolate reductase (NADPH), at 2,089,626 to 2,091,862 9244 mRNA_877: 9245 - K07425 CYP4A alkane 1-monooxygenase, at 2,092,667 to 2,095,053 9245

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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2,088,649 + 9243 mRNA_875 0.87 +2.8
2,088,826 - +0.5
2,089,375 - +0.8
2,089,516 + -0.5
2,089,851 - 9244 mRNA_876 0.10 -0.8
2,089,966 - 9244 mRNA_876 0.15 -1.5
2,090,685 + 9244 mRNA_876 0.47 -4.3
2,091,287 + 9244 mRNA_876 0.74 -1.2
2,091,323 - 9244 mRNA_876 0.76 -2.2
2,091,554 + 9244 mRNA_876 0.86 -2.3
2,091,717 + -3.9
2,092,031 - +1.2
2,092,153 - +1.6
2,092,159 - +0.4
2,092,163 + -0.3
2,092,307 + +0.4
2,092,323 + -0.0
2,092,447 - +0.6
2,092,562 + -0.4

Or see this region's nucleotide sequence