Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_930

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9298 and 9299 are separated by 237 nucleotides mRNA_930: 9298 - K00861 RFK, FMN1 riboflavin kinase, at 359 to 1,600 9298 mRNA_931: 9299 - K14794 RRP12 ribosomal RNA-processing protein 12, at 1,838 to 6,021 9299

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1 + +0.4
1 + +0.9
1 + +0.5
1 + +1.2
1 + +0.1
2 + +0.5
2 + +0.0
5 + +0.3
18 + +0.2
30 + +1.4
37 + +0.1
37 + +2.1
41 + -0.0
42 + +0.1
44 + -0.2
49 + +0.0
49 + +1.5
50 + +0.7
54 + +0.6
58 - +0.5
60 - +0.6
60 + +0.4
60 - -0.6
61 - +1.8
61 + -0.5
63 + +0.7
63 + +0.6
63 + -0.9
63 + +1.0
63 + +1.1
63 + +0.3
64 + -0.0
66 - -0.8
66 + -0.5
70 + +0.8
70 + +0.2
70 - +0.5
71 + -1.5
73 + +0.4
75 - -1.4
77 - -1.9
78 + +2.2
78 - -1.7
78 + -0.9
78 + -0.3
78 + -0.0
78 + -0.1
78 + +0.7
78 + +0.5
78 + -1.7
79 + -0.3
81 - +0.5
81 - +2.7
82 + +1.5
85 + +0.5
104 + +0.8
126 + -0.3
126 + -1.3
128 - +0.8
135 + +2.0
142 + +0.2
150 + +1.6
154 + +0.2
157 + +0.3
171 - -1.1
171 + -0.5
172 + +0.7
172 + +1.4
175 - +1.3
176 - +1.3
177 - +2.2
177 - +0.3
191 - +0.7
192 + +1.3
192 + -0.1
192 + +0.2
193 + +0.6
193 + -0.9
193 + +0.6
198 - -0.2
218 + -0.3
225 + -0.2
235 + +0.8
242 + +0.8
263 - -1.0
293 + +0.7
303 + +0.6
333 - -0.1
339 - -0.2
348 + +1.1
349 + -0.4
377 - +1.0
381 - +0.7
469 + -2.6
487 - 9298 mRNA_930 0.10 +1.2
722 + 9298 mRNA_930 0.29 -1.6
1,641 - +1.7
1,656 - -0.7
1,768 - -1.3
1,778 - -0.9
1,794 + -0.2

Or see this region's nucleotide sequence