Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_931

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9298 and 9299 are separated by 237 nucleotides9299 and 9300 are separated by 508 nucleotides mRNA_930: 9298 - K00861 RFK, FMN1 riboflavin kinase, at 359 to 1,600 9298 mRNA_931: 9299 - K14794 RRP12 ribosomal RNA-processing protein 12, at 1,838 to 6,021 9299 mRNA_932: 9300 - K01803 TPI, tpiA triosephosphate isomerase (TIM), at 6,530 to 8,158 9300

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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1,641 - +1.7
1,656 - -0.7
1,768 - -1.3
1,778 - -0.9
1,794 + -0.2
5,792 + -0.3
5,926 + +0.6
6,070 + +1.0
6,215 - +0.4
6,225 - +1.8
6,384 + -0.2

Or see this region's nucleotide sequence