Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_997

Experiment: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9364 and 9365 are separated by 235 nucleotides9365 and 9366 are separated by 245 nucleotides mRNA_996: 9364 - K19791 FET3_5 iron transport multicopper oxidase, at 160,516 to 163,771 9364 mRNA_997: 9365 - K08735 MSH2 DNA mismatch repair protein MSH2, at 164,007 to 168,056 9365 mRNA_998: 9366 - Hypothetical Protein, at 168,302 to 169,013 9366

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
163,109 - 9364 mRNA_996 0.80 -3.3
163,518 + -1.0
163,523 - -3.3
163,813 - +0.7
163,832 - +0.5
163,832 + -0.0
163,836 - +0.4
163,837 + -1.0
163,837 + +0.6
163,839 - +0.5
163,849 + -0.7
163,863 - +1.9
163,863 + +0.7
163,877 - -1.4
163,877 - +0.3
163,880 + -2.1
163,880 - +0.6
163,889 + -0.3
163,892 - +0.2
163,903 + -1.5
163,922 - +0.5
163,926 + -0.7
163,933 - +0.1
163,959 + +1.5
163,976 + -0.2
163,977 + -1.0
163,982 + +0.8
163,994 - +0.8
164,024 + +0.3
164,024 + +0.7
164,030 + +1.1
164,144 + -0.1
164,161 + +1.3
164,298 - -1.1
164,302 + -0.9
164,306 + -0.4
164,316 + +0.4
164,456 - 9365 mRNA_997 0.11 -1.2
164,606 - 9365 mRNA_997 0.15 +1.1
164,846 + 9365 mRNA_997 0.21 -2.3
165,159 + 9365 mRNA_997 0.28 +0.9
165,167 - 9365 mRNA_997 0.29 +1.0
165,183 - 9365 mRNA_997 0.29 +0.5
165,325 + 9365 mRNA_997 0.33 -0.7
165,339 + 9365 mRNA_997 0.33 +1.8
165,341 - 9365 mRNA_997 0.33 +0.5
165,349 + 9365 mRNA_997 0.33 -1.0
165,641 + 9365 mRNA_997 0.40 +0.5
165,731 + 9365 mRNA_997 0.43 -0.7
165,861 + 9365 mRNA_997 0.46 -1.4
165,896 - 9365 mRNA_997 0.47 +0.8
165,899 + 9365 mRNA_997 0.47 +2.5
166,038 - 9365 mRNA_997 0.50 -1.2
166,150 + 9365 mRNA_997 0.53 -0.4
166,311 + 9365 mRNA_997 0.57 +0.4
166,461 + 9365 mRNA_997 0.61 +1.0
166,751 - 9365 mRNA_997 0.68 -1.5
166,761 - 9365 mRNA_997 0.68 -0.4
166,892 + 9365 mRNA_997 0.71 -0.7
167,297 - 9365 mRNA_997 0.81 +0.1
167,457 - 9365 mRNA_997 0.85 +0.2
167,457 + 9365 mRNA_997 0.85 +0.2
167,633 - 9365 mRNA_997 0.90 -2.1
167,749 - +0.4
167,874 - +1.0
167,887 + -1.8
167,909 - +0.3
168,020 + +0.7
168,057 + +0.6
168,072 + +0.2
168,086 + +0.1
168,514 - 9366 mRNA_998 0.30 +0.5
168,644 + 9366 mRNA_998 0.48 +0.4
168,669 - 9366 mRNA_998 0.52 -0.6

Or see this region's nucleotide sequence