Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1038

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9405 and 9406 are separated by 583 nucleotides9406 and 9407 are separated by 115 nucleotides mRNA_1037: 9405 - K12160 SUMO, SMT3 small ubiquitin-related modifier, at 254,364 to 255,172 9405 mRNA_1038: 9406 - HMMPfam-Protein of unknown function (DUF2034)-PF10356, at 255,756 to 256,586 9406 mRNA_1039: 9407 - K18723 GLE1 nucleoporin GLE1, at 256,702 to 258,919 9407

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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254,930 + 9405 mRNA_1037 0.70 -0.3
255,185 - -0.0
255,344 + -0.0
255,885 - 9406 mRNA_1038 0.16 -0.3
256,353 - 9406 mRNA_1038 0.72 +0.6
256,457 + 9406 mRNA_1038 0.84 -1.1
256,460 - 9406 mRNA_1038 0.85 +1.0
256,507 - -0.1
256,638 - -2.5
256,644 - -0.6
256,659 + -0.3
256,661 + +1.1
256,661 - -1.2

Or see this region's nucleotide sequence