Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1058

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9425 and 9426 are separated by 321 nucleotides9426 and 9427 are separated by 780 nucleotides mRNA_1057: 9425 - K00654 SPT serine palmitoyltransferase, at 295,775 to 298,601 9425 mRNA_1058: 9426 - HMMPfam-Protein of unknown function (DUF1115)-PF06544,PIRSF--PIRSF038021,SUPERFAMILY--SSF54495, at 298,923 to 300,090 9426 mRNA_1059: 9427 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 300,871 to 301,562 9427

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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298,811 - +0.5
298,816 + -0.1
298,933 - -0.0
299,089 + 9426 mRNA_1058 0.14 -1.9
299,258 + 9426 mRNA_1058 0.29 +1.7
299,412 + 9426 mRNA_1058 0.42 +0.1
299,540 - 9426 mRNA_1058 0.53 +0.7
299,666 - 9426 mRNA_1058 0.64 -0.6
299,762 + 9426 mRNA_1058 0.72 -0.1
299,786 - 9426 mRNA_1058 0.74 +0.2
299,799 + 9426 mRNA_1058 0.75 +0.8
299,927 - 9426 mRNA_1058 0.86 +0.4
299,927 - 9426 mRNA_1058 0.86 +1.0
300,002 + +0.4
300,087 - +0.4
300,088 + +0.9
300,097 + -0.1
300,104 - -1.5
300,110 - +0.2
300,114 - +1.3
300,125 + +0.1
300,126 + -0.5
300,286 + +0.0
300,699 - +0.3
300,705 - -0.7
300,955 - 9427 mRNA_1059 0.12 -0.6
300,969 - 9427 mRNA_1059 0.14 -0.4
300,971 + 9427 mRNA_1059 0.14 +0.3

Or see this region's nucleotide sequence