Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1097

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9465 and 9466 are separated by 447 nucleotides mRNA_1097: 9465 - Hypothetical Protein, at 399,144 to 399,987 9465 mRNA_1098: 9466 - Hypothetical Protein, at 400,435 to 400,998 9466

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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398,220 + -0.6
398,254 - -0.2
398,260 - -1.5
398,302 + +0.5
398,386 - -0.6
398,406 - -0.3
398,559 - +0.8
398,565 - -1.0
398,699 + +0.4
398,706 - -0.6
398,707 - +1.1
398,709 - -0.2
398,715 - +0.8
398,718 - +0.1
398,726 - -0.8
398,734 + +1.0
398,864 - +0.2
398,870 - +0.0
398,902 + +0.6
398,912 + -1.1
399,011 + -0.4
399,182 + +0.1
399,325 - 9465 mRNA_1097 0.21 -0.2
399,445 - 9465 mRNA_1097 0.36 +0.1
399,762 + 9465 mRNA_1097 0.73 +0.4
399,861 + 9465 mRNA_1097 0.85 +1.1
399,868 - 9465 mRNA_1097 0.86 +0.2
400,339 + +2.1
400,535 + 9466 mRNA_1098 0.18 +1.0
400,656 - 9466 mRNA_1098 0.39 +0.4
400,657 + 9466 mRNA_1098 0.39 +0.6
400,822 + 9466 mRNA_1098 0.69 +0.9
400,947 + +0.4

Or see this region's nucleotide sequence