Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1188

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9555 and 9556 are separated by 271 nucleotides9556 and 9557 are separated by 573 nucleotides mRNA_1187: 9555 - Hypothetical Protein, at 607,459 to 608,635 9555 mRNA_1188: 9556 - Hypothetical Protein, at 608,907 to 610,370 9556 mRNA_1189: 9557 - K02183 CALM calmodulin, at 610,944 to 612,445 9557

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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608,264 - 9555 mRNA_1187 0.68 +0.4
608,982 + +0.6
609,701 + 9556 mRNA_1188 0.54 +0.7
609,863 - 9556 mRNA_1188 0.65 +1.6
610,417 + +0.3
610,435 + -0.9
610,452 - -0.3

Or see this region's nucleotide sequence