Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1211

Experiment: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9578 and 9579 are separated by 160 nucleotides9579 and 9580 are separated by 640 nucleotides mRNA_1210: 9578 - K13076 SLD Delta8-fatty-acid desaturase, at 657,953 to 659,955 9578 mRNA_1211: 9579 - K15078 SLX1 structure-specific endonuclease subunit SLX1, at 660,116 to 662,467 9579 mRNA_1212: 9580 - HMMPfam-Regulator of G protein signaling domain-PF00615,ProSiteProfiles-RGS domain profile.-PS50132,SMART-Regulator of G protein signalling domain-SM00315,SUPERFAMILY--SSF48097, at 663,108 to 664,692 9580

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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659,920 - +0.4
659,935 - +0.5
660,304 - +1.2
660,650 - 9579 mRNA_1211 0.23 +0.9
660,977 - 9579 mRNA_1211 0.37 +1.3
662,460 + +0.2
662,572 + +2.6
662,685 - +0.3
662,687 - -0.3
662,843 - +2.4

Or see this region's nucleotide sequence